Bacteriophage Genome Annotation

<p></p><p><b>Reformatted PHROGs database</b></p> <p>Reformatting of the PHROGs database (https://phrogs.lmge.uca.fr/index.php) to allow it to be used within Prokka directly and output the PHROGS annotations to the “product” description in genbank files. All annotations are maintained from the PHROGs database set.</p> <p>File is called all_PHROGs.tar.gz</p> <p>Place in <i>prokka-1.13-2/db/hmm/</i> to use with prokka</p> <p>Contained within this repository are worked examples for the assembly and annotation of a bacteriophage genome.</p> <p>Full detailed instructions are provided as part of the manuscript “Phage Genome annotation: where to begin and end” </p> <p>File: SRR13108336_Illumina.tar.gz contains all the files produced from the intermediary steps in the assembly and annotation of a phage genome from single end Illumina reads. Originally deposited by Milhaven et al (<a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8407768/)">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8407768/)</a> and used as an exemplar </p> <p>File: nanopore_example.tar.gz contains all the files produced from the intermediary steps in the assembly and annotation of a phage genome from nanopore data. Originally deposited by D`Souza et al (<a href="https://journals.asm.org/doi/10.1128/MRA.00730-20">https://journals.asm.org/doi/10.1128/MRA.00730-20</a>) </p><br><p></p>