.GZ

variant_catalog.json.gz (3.3 MB)

.GZ

hg38.hipstr_reference.bed.gz (20.02 MB)

.GZ

hg38_ver13.bed.gz (7.3 MB)

.GZ

hg38_ver13_2-6rpts.bed.gz (7.04 MB)

.GZ

grch38.trf_period1-6.dedup.sorted.bed.gz (3.51 MB)

.GZ

hg38_ver13_gangstr_panel_extracted_4_stretch.bed.gz (7.29 MB)

.GZ

hg38_ver13_gangstr_panel_extracted_4_hipstr.bed.gz (6.22 MB)

DATASET

Supplmentary_file 1_corriel_samps_STR_tools.csv (9.1 kB)

DATASET

Supplementary_file 2_forensic_STRs_calling.xlsx (18.36 kB)

.GZ

custom_STR_reference_catlog_790661_loci.gz (6.86 MB)

TEXT

README.md (2.1 kB)

DOCUMENT

Code_availability_manuscript-07-02-2023.pdf (96.67 kB)

1/0

12 files

Supplementary material and code availability

Version 3 2023-11-22, 13:57

Version 2 2023-09-13, 07:34

Version 1 2023-02-08, 10:46

dataset

posted on 2023-11-22, 13:57 authored by John OketchJohn Oketch

Code used to run STR genotyping software (GangSTR, HipSTR, STRetch, ExpansionHunter, and ExpansionHunter De novo). The folder also contains supplementary files for the manuscript:

" A comparison of software for analysis of rare and common short tandem repeat (STR) variation using human genome sequences from clinical and population-based samples "