Virus-host interactions along a grassland soil depth profile

<p>This repository contains data used in Muscatt et al. 2022 (preprint).</p> <p><br></p> <p>c1.ntw.gz = vConTACT2 network output file</p> <p><br></p> <p>DNAP_plus_ref.faa.gz = fasta amino acid file containing DNA polymerase protein sequences used for phylogenetic tree</p> <p><br></p> <p>DNAP_tree.gz = tree file for jumbo phage phylogenetic tree based on DNA polymerase gene</p> <p><br></p> <p>edges.csv.gz = edges for drawing vConTACT2 network</p> <p><br></p> <p>gene_to_genome.csv.gz = viral gene to genome index used as input to vConTACT2</p> <p><br></p> <p>genome_by_genome.csv.gz = viral cluster statuses outputted by vConTACT2</p> <p><br></p> <p>MAG_bins.fna.gz = fasta nucleotide file containing 285 microbial MAG bins previously assembled by Sharrar et al. 2020</p> <p><br></p> <p>nodes.csv.gz = nodes for drawing vConTACT2 network</p> <p><br></p> <p>rpS3.fna.gz = fasta nucleotide file containing 1516 rpS3 sequences</p> <p><br></p> <p>vOTU_prediction.csv.gz = stats on viral scaffold prediction</p> <p><br></p> <p>vOTU_proteins.faa.gz = fasta amino acid file containing XXX dsDNA vOTU genes</p> <p><br></p> <p>vOTUs.fna.gz = fasta nucleotide file containing 10,196 </p> <p><br></p> <p>dsDNA vOTUs</p> <p><br></p> <h4><br></h4> <h4>The Supplementary table titles are as follows:</h4> <p>Table S1: Assembly statistics for sample libraries.</p> <p>Table S2: DNA vOTU raw reads.</p> <p>Table S3: Sources of hits to viral sequences in PhageClouds database.</p> <p>Table S4: Microbial OTU normalised coverage. </p> <p>Table S5: Raw read bacterial class taxonomy.</p> <p>Table S6: Annotations of viral-encoded auxiliary metabolic genes.</p> <p>Table S7: Microbial MAG normalised coverage.</p> <p>Table S8: Annotations of viral genes under positive selection.</p> <p><br></p> <p><br></p> <p><br></p>