posted on 2018-07-31, 08:33authored byLouise J. Walport, Richard J. Hopkinson, Rasheduzzaman Chowdhury, Rachel Schiller, Wei Ge, Akane Kawamura, Christopher J. Schofield
While the oxygen-dependent reversal of lysine N(ɛ)-methylation is well established, the existence of bona fide N(ω)-methylarginine demethylases (RDMs) is controversial. Lysine demethylation, as catalysed by two families of lysine demethylases (the flavin-dependent KDM1 enzymes and the 2-oxoglutarate- and oxygen-dependent JmjC KDMs, respectively), proceeds via oxidation of the N-methyl group, resulting in the release of formaldehyde. Here we report detailed biochemical studies clearly demonstrating that, in purified form, a subset of JmjC KDMs can also act as RDMs, both on histone and non-histone fragments, resulting in formaldehyde release. RDM catalysis is studied using peptides of wild-type sequences known to be arginine-methylated and sequences in which the KDM's methylated target lysine is substituted for a methylated arginine. Notably, the preferred sequence requirements for KDM and RDM activity vary even with the same JmjC enzymes. The demonstration of RDM activity by isolated JmjC enzymes will stimulate efforts to detect biologically relevant RDM activity.
Funding
This work was supported by grants from Cancer Research UK (C8717/A18245) and the Wellcome Trust (091857/7/10/7), the Biotechnology and Biological Sciences Research Council (studentships to L.J.W. and R.J.H.) and the Engineering and Physical Sciences Research Council (EP/L003376/1). R.J.H. acknowledges a William R. Miller Junior Research Fellowship, St Edmund Hall. A.K. acknowledges a Royal Society Dorothy Hodgkin Fellowship (DH120028) and the BHF Centre of Research Excellence Oxford (RE/13/1/30181). We thank Tristan Smart for purification of KDM2A, the Structural Genomics Consortium (Aleksandra Szykowska) for providing KDM5C protein and the Flag-tagged full-length KDM5C plasmids (Pavel Savitsky), Sarah Madden for KDM4A protein, Matthew Smith for assistance with the NMR experiments and Alexandra Brooks for the H3(14–34)K27Rme2a peptide.
History
Citation
Nature Communications, 2016, 7:11974
Author affiliation
/Organisation/COLLEGE OF SCIENCE AND ENGINEERING/Department of Chemistry