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CcpNmr AnalysisScreen, a new software programme with dedicated automated analysis tools for fragment-based drug discovery by NMR

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posted on 2022-08-09, 09:42 authored by LG Mureddu, TJ Ragan, EJ Brooksbank, GW Vuister
Fragment-based drug discovery or FBDD is one of the main methods used by industry and academia for identifying drug-like candidates in early stages of drug discovery. NMR has a significant impact at any stage of the drug discovery process, from primary identification of small molecules to the elucidation of binding modes for guiding optimisations. The essence of NMR as an analytical tool, however, requires the processing and analysis of relatively large amounts of single data items, e.g. spectra, which can be daunting when managed manually. One bottleneck in FBDD by NMR is a lack of adequate and well-integrated resources for NMR data analysis that are freely available to the community. Thus, scientists typically resort to manually inspecting large datasets and relying predominantly on subjective interpretations. In this manuscript, we present CcpNmr AnalysisScreen, a software package that provides computational tools for automated analysis of FBDD data by NMR. We outline how the quality of collected spectra can be evaluated quickly, and how robust workflows can be optimised for reliable and rapid hit identification. With an intuitive graphical user interface and powerful algorithms, AnalysisScreen enables easy analysis of the large datasets needed in the early process of drug discovery by NMR.

Funding

LGM acknowledges his stipend provided by MRC-IMPACT PhD programme (Grant MR/NO13913/1) and GWV acknowledges funding of the CCPN project by MRC (Grants MR/L000555/1 and MR/P00038X/1).

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Citation

Mureddu, L.G., Ragan, T.J., Brooksbank, E.J. et al. CcpNmr AnalysisScreen, a new software programme with dedicated automated analysis tools for fragment-based drug discovery by NMR. J Biomol NMR 74, 565–577 (2020). https://doi.org/10.1007/s10858-020-00321-1

Author affiliation

Department of Molecular and Cell Biology

Version

  • VoR (Version of Record)

Published in

Journal of Biomolecular NMR

Volume

74

Issue

10-11

Pagination

565 - 577

Publisher

Springer

issn

0925-2738

eissn

1573-5001

Acceptance date

2020-05-26

Copyright date

2020

Available date

2020-07-07

Spatial coverage

Netherlands

Language

eng

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