posted on 2025-06-30, 10:45authored byZehui Duan, Jiaao Wei, Stephen B Carr, Miguel Ramirez, Rhiannon M Evans, Philip AshPhilip Ash, Patricia Rodriguez-Macia, Amit Sachdeva, Kylie Alison Vincent
<p dir="ltr">The noncanonical amino acid, para-cyanophenylalanine (CNF), when incorporated into metalloproteins, functions as an infrared spectroscopic probe for the redox state of iron-sulfur clusters, offering a strategy for determining electron occupancy in the electron transport chains of complex metalloenzymes. A redshift of ≈1–2 cm<sup>−1</sup> in the nitrile (NC) stretching frequency is observed, following reduction of spinach ferredoxin modified to contain CNF close to its [2Fe–2S] center, and this shift is reversed on re-oxidation. We extend this to CNF positioned near to the proximal [4Fe–4S] cluster of the [FeFe] hydrogenase from <i>Desulfovibrio desulfuricans</i>. In combination with a distal [4Fe–4S] cluster and the [4Fe–4S] cluster of the active site ‘H-cluster’ ([4Fe–4S]<sub>H</sub>), the proximal cluster forms an electron relay connecting the active site to the surface of the protein. Again, a reversible shift in wavenumber for CNF is observed, following cluster reduction in either apo-protein (containing the iron-sulfur clusters but lacking the active site) or holo-protein with intact active site, demonstrating the general applicability of this approach to studying complex metalloenzymes.</p>
Funding
Single protein crystal spectroscopy and crystallography of hydrogenase under electrochemical control
Biotechnology and Biological Sciences Research Council