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Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis

journal contribution
posted on 2016-11-28, 17:21 authored by B. D. Hobbs, K. de Jong, M. Lamontagne, Y. Bossé, Nick Shrine, María Soler Artigas, Victoria E. Jackson, Louise V. Wain, I. P. Hall, A. B. Wyss, S. J. London, K. E. North, N. Franceschini1, D. P. Strachan, T. H. Beaty, J. E. Hokanson, J. D. Crapo, P. J. Castaldi, R. P. Chase, T. M. Bartz, S. R. Heckbert, B. M. Psaty, S. A. Gharib, P. Zanen, J. W. Lammers, M. Oudkerk, H. J. Groen, N. Locantore, R. Tal-Singer, S. I. Rennard, W. Timens, P. D. Paré, J. C. Latourelle, J. Dupuis, G. T. O'Connor, J. B. Wilk, W. J. Kim, M. K. Lee, Y.-M. Oh, J. M. Vonk, H. J. de Koning, S. Leng, S. A. Belinsky, Y. Tesfaigzi, A. Manichaikul, X.-Q. Wang, S. S. Rich, R. G. Barr, D. Sparrow, A. A. Litonjua, P. Bakke, A. Gulsvik, L. Lahousse, G. G. Brusselle, B. H. Stricker, A. G. Uitterlinden, E. J. Ampleford, E. R. Bleecker, P. G. Woodruff, D. A. Meyers, D. Qiao, D. A. Lomas, J.-J. Yim, D. K. Kim, I. Hawrylkiewicz, P. Sliwinski, M. Hardin, T. E. Fingerlin, D. A. Schwartz, D. Postma, W. MacNee, M. D. Tobin, E. K. Silverman1, H. M. Boezen3, M. H. Cho1, COPDGene Investigators, ECLIPSE Investigators, LifeLines Investigators, SPIROMICS Research Group, International COPD Genetics Network Investigators, UK BiLEVE Investigators, International COPD Genetics Consortium
Chronic obstructive pulmonary disease (COPD) is a leading cause of mortality worldwide1. We performed a genetic association in 15,256 cases and 47,936 controls, with replication of select top results (P < 5x10-6) in 9,498 cases and 9,748 controls. In the combined meta-analysis, we identified 22 loci at genome-wide significance, including 13 new associations with COPD. Nine of these 13 loci have been associated with lung function in general population samples2-7; however, 4 (EEFSEC, DSP, MTCL1, and SFTPD) are novel. We noted 2 loci shared with pulmonary fibrosis8,9 (FAM13A and DSP) but with opposite risk alleles for COPD. None of our loci overlapped with genome-wide associations for asthma; however, one locus has been implicated in the joint susceptibility to asthma and obesity10. We also identified genetic correlation between COPD and asthma. Our findings highlight novel loci, demonstrate the importance of specific lung function loci to COPD, and identify potential regions of genetic overlap between COPD and other respiratory diseases.

History

Citation

Nature Genetics, 2017, 49, 426–432

Author affiliation

/Organisation/COLLEGE OF MEDICINE, BIOLOGICAL SCIENCES AND PSYCHOLOGY/School of Medicine/Department of Health Sciences

Version

  • AM (Accepted Manuscript)

Published in

Nature Genetics

Publisher

Nature Publishing Group

issn

1061-4036

eissn

1546-1718

Acceptance date

2016-11-23

Available date

2017-04-05

Publisher version

http://www.nature.com/ng/journal/v49/n3/full/ng.3752.html

Notes

The genome-wide association summary statistics generated in the Stage 1 analysis of the current study are available in the dbGaP repository, https://www.ncbi.nlm.nih.gov/projects/gap/cgibin/study.cgi?study_id=phs000179.v4.p2 The Stage 2 analysis summary statistics are available in Supplementary Table 3.

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en

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