posted on 2009-02-18, 14:43authored byGudmundur A. Thorisson, Owen Lancaster, Robert C. Free, Robert K. Hastings, Pallavi Sarmah, Debasis Dash, Samir K. Brahmachari, Anthony J. Brookes
The Human Genome Variation database of Genotype to Phenotype information (HGVbaseG2P) is a new central database for summary-level findings produced by human genetic association studies, both large and small. Such a database is needed so that researchers have an easy way to access all the available association study data relevant to their genes, genome regions or diseases of interest. Such a depository will allow true positive signals to be more readily distinguished from false positives (type I error) that fail to consistently replicate. In this paper we describe how HGVbaseG2P has been constructed, and how its data are gathered and organized. We present a range of user-friendly but powerful website tools for searching, browsing and visualizing G2P study findings. HGVbaseG2P is available at http://www.hgvbaseg2p.org.
This paper was published as Nucleic Acids Research, 2009, 37, Database issue D797-D802. It is available from http://nar.oxfordjournals.org/cgi/content/abstract/37/suppl_1/D797. Doi: 10.1093/nar/gkn748