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Human retinoic acid-regulated CD161+ regulatory T cells support wound repair in intestinal mucosa.

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posted on 2019-10-17, 16:28 authored by GAM Povoleri, E Nova-Lamperti, C Scottà, G Fanelli, Y-C Chen, PD Becker, D Boardman, B Costantini, M Romano, P Pavlidis, R McGregor, E Pantazi, D Chauss, H-W Sun, H-Y Shih, DJ Cousins, N Cooper, N Powell, C Kemper, M Pirooznia, A Laurence, S Kordasti, M Kazemian, G Lombardi, B Afzali
Repair of tissue damaged during inflammatory processes is key to the return of local homeostasis and restoration of epithelial integrity. Here we describe CD161+ regulatory T (Treg) cells as a distinct, highly suppressive population of Treg cells that mediate wound healing. These Treg cells were enriched in intestinal lamina propria, particularly in Crohn's disease. CD161+ Treg cells had an all-trans retinoic acid (ATRA)-regulated gene signature, and CD161 expression on Treg cells was induced by ATRA, which directly regulated the CD161 gene. CD161 was co-stimulatory, and ligation with the T cell antigen receptor induced cytokines that accelerated the wound healing of intestinal epithelial cells. We identified a transcription-factor network, including BACH2, RORγt, FOSL2, AP-1 and RUNX1, that controlled expression of the wound-healing program, and found a CD161+ Treg cell signature in Crohn's disease mucosa associated with reduced inflammation. These findings identify CD161+ Treg cells as a population involved in controlling the balance between inflammation and epithelial barrier healing in the gut.

Funding

The authors thank patients who contributed samples toward this study. This work was supported by the Wellcome Trust (grant 097261/Z/11/Z to B.A. and WT101159 to N.P.), the Crohn’s and Colitis Foundation of America (grant CCFA no. 3765 — CCFA genetics initiative to A.L.), British Heart Foundation (grant RG/13/12/30395 to G.L.), institutional start-up fund from Purdue University and National Heart, Lung, and Blood Institute (grant 5K22HL125593-02 to M.K.). Research was also supported by the National Institute for Health Research (NIHR) Biomedical Research Centre at Guy’s and St Thomas’ National Health Service (NHS) Foundation Trust and King’s College London. The views expressed are those of the author(s) and not necessarily those of the NHS, the NIHR or the Department of Health. This research was supported (in part) by the Intramural Research Programs of the National Institute of Arthritis and Musculoskeletal and Skin Diseases, the National Institute of Diabetes and Digestive and Kidney Diseases and the National Heart, Lung, and Blood Institute of the National Institutes of Health. The authors thank J. O’Shea (National Institutes of Health) for his support and for providing access to ATAC-seq, the National Heart, Lung, and Blood Institute DNA Sequencing and Genomics Core for performing single-cell sequencing experiment and acknowledge the assistance of M. Arno (Genomics Centre, King’s College London) with gene expression microarray studies as well as S. Heck and R. Ellis (Biomedical Research Centre Flow Core Facility, King’s College London) for CyTOF data acquisition. In addition, the authors thank E. Mathé (Ohio State University) for critically reading the manuscript.

History

Citation

Nature Immunology, 2018, 19 (12), pp. 1403-1414

Author affiliation

/Organisation/COLLEGE OF LIFE SCIENCES/School of Medicine/Department of Infection, Immunity and Inflammation

Version

  • AM (Accepted Manuscript)

Published in

Nature Immunology

Publisher

Nature Research (part of Springer Nature)

eissn

1529-2916

Acceptance date

2018-09-07

Copyright date

2018

Available date

2019-10-17

Publisher version

https://www.nature.com/articles/s41590-018-0230-z

Notes

The data generated for this study have been deposited at the Gene Expression Omnibus (GEO) under accession code GSE119375. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE119375 Supplementary information is available for this paper at https://doi.org/10.1038/s41590-018-0230-z.

Language

en

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