Metagenomics of the viral community in three cattle slurry samples
journal contribution
posted on 2019-05-31, 13:43 authored by Pavelas Sazinas, Slawomir Michniewski, Branko Rihtman, Tamsin Redgwell, Aurelija Grigonyte, Amelia Brett, Bethany Guck, Rebecca Smith, Steven P. Hooton, Jon L. Hobman, Andrew D. MillardThe diversity of viruses in slurries from dairy farming remains largely uncharacterized. Here we report viral diversity found in cattle slurry from a dairy farm in the East Midlands in the United Kingdom. The same slurry tank was sampled in three consecutive years, and the viral fraction was isolated and sequenced.
Funding
Illumina sequencing was performed at the Warwick Medical School, University of Warwick. Bioinformatic analysis was carried out using MRC CLIMB Infrastructure MR/L015080/1. This research was supported by teaching funds from the School of Life Sciences, University of Warwick, to A.D.M. J.L.H., S.P.H., and A.D.M. are funded by NERC AMR-EVAL FARMS (NE/N019881/1).
History
Citation
Microbiology Resource Announcements, 2019, 8, pp. e01442-18Author affiliation
/Organisation/COLLEGE OF LIFE SCIENCES/School of Medicine/Department of Infection, Immunity and InflammationVersion
- VoR (Version of Record)
Published in
Microbiology Resource AnnouncementsPublisher
American Society for Microbiologyeissn
2576-098XAcceptance date
2019-01-07Copyright date
2019Available date
2019-05-31Publisher DOI
Publisher version
https://mra.asm.org/content/8/7/e01442-18Notes
This whole-genome shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession number PRJEB28736.Language
enAdministrator link
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