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NMR Exchange Format : a unified and open standard for representation of NMR restraints data

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journal contribution
posted on 2015-05-22, 10:54 authored by Geerten W. Vuister, A. Gutmanas, P. D. Adams, B. Bardiaux, H. Berman, D. A. Case, Rasmus H. Fogh, P. Guentert, P. M. S. Hendrickx, T. Herrmann, G. Kleywegt, N. Kobayashi, O. F. Lange, J. L. Markley, G. T. Montelione, M. Nilges, Timothy J. Ragan, C. D. Schwieters, R. Tejero, E. Ulrich, S. Velankar, W. F. Vranken, J. R. Wedell, J. Westbrook, D. S. Wishart, G. W. Vuister
We present a unified, easily adaptable, open-­‐source NMR exchange format (NEF) for NMR restraints and associated data. Developers of the major software packages for NMR structure determination and refinement have agreed to make their software able to read and write NEF-­‐compliant files. Detailed specifications can be found at https://github.com/NMRExchangeFormat/NEF.

Funding

The European Bioinformatics Institute and Rutgers University workshops were made possible by the generous support of the Wellcome Trust (grant 088944 to G.J.K.), the European Molecular Biology Laboratory, the UK Biotechnology and Biological Sciences Research Council (grants BB/J007471 to G.J.K., BB/J007897/1 to G.W.V. and BB/K021249/1 to G.W.V. and G.T.M.), the UK Medical Research Council (grant MR/L000555/1 to G.W.V.), the US National Science Foundation (grant DBI-1338415 to H.M.B.), the Japan Science and Technology Agency– National Bioscience Database Center, the US National Institutes of Health (NIH; grants and P41LM05799 and R01GM109046 to J.L.M.). C.D.S. is supported by the Intramural Research Program of the NIH Center for Information Technology. P.G. is supported by the Lichtenberg program of the Volkswagen Foundation and by a Grant-in-Aid for Scientific Research by the Japan Society for the Promotion of Science. W.F.V. is supported by the Brussels Institute for Research and Innovation (Innoviris, grant BB2B 2010-1-12).

History

Citation

Nature Structural & Molecular Biology 22, 433–434 (2015)

Author affiliation

/Organisation/COLLEGE OF MEDICINE, BIOLOGICAL SCIENCES AND PSYCHOLOGY/School of Biological Sciences/Department of Biochemistry

Version

  • VoR (Version of Record)

Published in

Nature Structural & Molecular Biology 22

Publisher

Nature Publishing Group

issn

1545-9993

eissn

1545-9985

Available date

2015-08-20

Publisher version

http://www.nature.com/nsmb/journal/v22/n6/full/nsmb.3041.html

Language

en

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