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Sex-specific transcription and DNA methylation landscapes of the Asian citrus psyllid, a vector of huanglongbing pathogens

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posted on 2024-05-02, 09:20 authored by Xiudao Yu, Hollie Marshall, Yan Liu, Yu Xiong, Xiangdong Zeng, Haizhong Yu, Wei Chen, Guchun Zhou, Bo Zhu, Laura Ross, Zhanjun Lu

The relationship of DNA methylation and sex-biased gene expression is of high interest, it allows research into mechanisms of sexual dimorphism and the development of potential novel strategies for insect pest control. The Asian citrus psyllid, Diaphorina citri Kuwayama, is a major vector for the causative agents of Huanglongbing (HLB), which presents an unparalleled challenge to citrus production worldwide. Here, we identify the X chromosome of D. citri and investigate differences in the transcription and DNA methylation landscapes between adult virgin males and females. We find a large number of male-biased genes on the autosomes and a depletion of such on the X chromosome. We have also characterized the methylome of D. citri, finding low genome-wide levels, which is unusual for an hemipteran species, as well as evidence for both promoter and TE methylation. Overall, DNA methylation profiles are similar between the sexes but with a small number of differentially methylated genes found to be involved in sex differentiation. There also appears to be no direct relationship between differential DNA methylation and differential gene expression. Our findings lay the groundwork for the development of novel epigenetic-based pest control methods, and given the similarity of the D. citri methylome to some other insect species, these methods could be applicable across agricultural insect pests.

Funding

This work is funded by the National Natural Science Foundation of China (grant no. 32160634 and 31601379), the Natural Science Foundation for Distinguished Young Scholars of Jiangxi province (grant no. 20212ACB215001), the Double Thousand Plan of Jiangxi Province (grant no. jxsq2019101058), and the Major Science and Technology R&D Program of Jiangxi Province (grant no. 20194ABC28007). H.M. was funded by the ERC Grant “PGErepro” awarded to L.R.

History

Author affiliation

College of Life Sciences/Genetics & Genome Biology

Version

  • VoR (Version of Record)

Published in

Evolution

Volume

77

Issue

5

Pagination

1203 - 1215

Publisher

Oxford University Press (OUP)

issn

0014-3820

eissn

1558-5646

Copyright date

2023

Available date

2024-05-02

Spatial coverage

United States

Language

en

Deposited by

Dr Hollie Marshall

Deposit date

2024-04-25

Data Access Statement

All RNA-seq, BS-seq and whole-genome sequencing data generated for this study were deposited in GenBank under Bio-Project accession number PRJNA774108. All scripts are available at: DOI:10.5281/zenodo.7385397. New genome annotations and GO terms can be found at: https://doi. org/10.6084/m9.figshare.17013980.v1.

Rights Retention Statement

  • No

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