Sex-specific transcription and DNA methylation landscapes of the Asian citrus psyllid, a vector of huanglongbing pathogens
The relationship of DNA methylation and sex-biased gene expression is of high interest, it allows research into mechanisms of sexual dimorphism and the development of potential novel strategies for insect pest control. The Asian citrus psyllid, Diaphorina citri Kuwayama, is a major vector for the causative agents of Huanglongbing (HLB), which presents an unparalleled challenge to citrus production worldwide. Here, we identify the X chromosome of D. citri and investigate differences in the transcription and DNA methylation landscapes between adult virgin males and females. We find a large number of male-biased genes on the autosomes and a depletion of such on the X chromosome. We have also characterized the methylome of D. citri, finding low genome-wide levels, which is unusual for an hemipteran species, as well as evidence for both promoter and TE methylation. Overall, DNA methylation profiles are similar between the sexes but with a small number of differentially methylated genes found to be involved in sex differentiation. There also appears to be no direct relationship between differential DNA methylation and differential gene expression. Our findings lay the groundwork for the development of novel epigenetic-based pest control methods, and given the similarity of the D. citri methylome to some other insect species, these methods could be applicable across agricultural insect pests.
Funding
This work is funded by the National Natural Science Foundation of China (grant no. 32160634 and 31601379), the Natural Science Foundation for Distinguished Young Scholars of Jiangxi province (grant no. 20212ACB215001), the Double Thousand Plan of Jiangxi Province (grant no. jxsq2019101058), and the Major Science and Technology R&D Program of Jiangxi Province (grant no. 20194ABC28007). H.M. was funded by the ERC Grant “PGErepro” awarded to L.R.
History
Author affiliation
College of Life Sciences/Genetics & Genome BiologyVersion
- VoR (Version of Record)
Published in
EvolutionVolume
77Issue
5Pagination
1203 - 1215Publisher
Oxford University Press (OUP)issn
0014-3820eissn
1558-5646Copyright date
2023Available date
2024-05-02Publisher DOI
Spatial coverage
United StatesLanguage
enPublisher version
Deposited by
Dr Hollie MarshallDeposit date
2024-04-25Data Access Statement
All RNA-seq, BS-seq and whole-genome sequencing data generated for this study were deposited in GenBank under Bio-Project accession number PRJNA774108. All scripts are available at: DOI:10.5281/zenodo.7385397. New genome annotations and GO terms can be found at: https://doi. org/10.6084/m9.figshare.17013980.v1.Rights Retention Statement
- No