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TBNet: a context-aware graph network for tuberculosis diagnosis

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journal contribution
posted on 2022-03-11, 09:45 authored by SY Lu, SH Wang, X Zhang, YD Zhang
Background and objective
Tuberculosis (TB) is an infectious bacterial disease. It can affect the human lungs, brain, bones, and kidneys. Pulmonary tuberculosis is the most common. This airborne bacterium can be transmitted with the droplets by coughing and sneezing. So far, the most convenient and effective method for diagnosing TB is through medical imaging. Computed tomography (CT) is the first choice for lung imaging in clinics because the conditions of the lungs can be interpreted from CT images. However, manual screening poses an enormous burden for radiologists, resulting in high inter-observer variances. Hence, developing computer-aided diagnosis systems to implement automatic TB diagnosis is an emergent and significant task for researchers and practitioners. This paper proposed a novel context-aware graph neural network called TBNet to detect TB from chest CT images

Methods
Traditional convolutional neural networks can extract high-level image features to achieve good classification performance on the ImageNet dataset. However, we observed that the spatial relationships between the feature vectors are beneficial for the classification because the feature vector may share some common characteristics with its neighboring feature vectors. To utilize this context information for the classification of chest CT images, we proposed to use a feature graph to generate context-aware features. Finally, a context-aware random vector functional-link net served as the classifier of the TBNet to identify these context-aware features as TB or normal

Results
The proposed TBNet produced state-of-the-art classification performance for detecting TB from healthy samples in the experiments

Conclusions
Our TBNet can be an accurate and effective verification tool for manual screening in clinical diagnosis.

Funding

Hope Foundation for Cancer Research, UK (RM60G0680)

Royal Society International Exchanges Cost Share Award, UK (RP202G0230)

Medical Research Council Confidence in Concept Award, UK (MC_PC_17171)

British Heart Foundation Accelerator Award, UK (AA/18/3/34220)

Sino-UK Industrial Fund, UK (RP202G0289)

Global Challenges Research Fund (GCRF), UK (P202PF11)

History

Citation

Computer Methods and Programs in Biomedicine, Volume 214, February 2022, 106587

Author affiliation

School of Computing and Mathematical Sciences, University of Leicester

Version

  • AM (Accepted Manuscript)

Published in

Computer Methods and Programs in Biomedicine

Volume

214

Pagination

106587

Publisher

Elsevier BV

issn

0169-2607

eissn

1872-7565

Acceptance date

2021-12-13

Copyright date

2021

Available date

2022-12-16

Language

eng

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