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The Liberfarb syndrome, a multisystem disorder affecting eye, ear, bone, and brain development, is caused by a founder pathogenic variant in the PISD gene

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posted on 2020-05-14, 10:23 authored by Virginie G Peter, Mathieu Quinodoz, Jorge Pinto-Basto, Sergio B Sousa, Silvio Alessandro Di Gioia, Gabriela Soares, Gabriela Ferraz Leal, Eduardo D Silva, Rosanna Pescini Gobert, Noriko Miyake, Naomichi Matsumoto, Elizabeth C Engle, Sheila Unger, Frederic Shapiro, Andrea Superti-Furga, Carlo Rivolta, Belinda Campos-Xavier
We observed four individuals in two unrelated but consanguineous families from Portugal and Brazil affected by early-onset retinal degeneration, sensorineural hearing loss, microcephaly, intellectual disability, and skeletaldysplasia with scoliosis and short stature. The phenotype precisely matched that of an individual of Azorean descent published in 1986 by Liberfarb andcoworkers. Methods: Patients underwent specialized clinical examinations (including ophthalmological, audiological, orthopedic, radiological, and developmental assessment). Exome and targeted sequencing was performed on selected individuals. Minigene constructs were assessed by quantitative polymerase chainreaction (qPCR) and Sanger sequencing. Results: Affected individuals shared a 3.36-Mb region of autozygosity onchromosome 22q12.2, including a 10-bp deletion (NM_014338.3:c.904-12_904-3delCTATCACCAC), immediately upstream of the last exon of the PISD (phosphatidylserinedecarboxylase) gene. Sequencing of PISD from paraffin-embedded tissue from the 1986 case revealed the identical homozygous variant. In HEK293T cells, this variant led to aberrant splicing of PISD transcripts. Conclusion: We have identified the genetic etiology of the Liberfarb syndrome, affecting brain, eye, ear, bone, and connective tissue. Our work documents the migration of a rare Portuguese founder variant to two continents and highlights the link between phospholipid metabolism and bone formation, sensory defects,and cerebral development, while raising the possibility of therapeutic phospholipid replacement.

Funding

This work was supported by the Swiss National Science Foundation (grant 176097) to C.R.; the Jürg Tschopp MD–PhD Scholarship to V.G.P.; the PhD Fellowship in Life Sciences (Faculty of Biology and Medicine, University of Lausanne) to M.Q.; the Fondation Guillaume Gentil (supporting the Division of Genetic Medicine in Lausanne); the National Institutes of Health (NIH) grant U53HD090255 to Boston Children’s Hospital Department of Neurology; the Japan Agency for Medical Research and Development (AMED) (grants JP18ek0109280, JP18dm0107090, JP18ek0109301, JP18ek0109348, and JP18kk020500 to N. Matsumoto); and the Japan Society for the Promotion of Science (JSPS) KAKENHI (grants JP17H01539 to N. Matsumoto and JP16H05357 to N. Miyake).

History

Citation

Genetics in Medicine 21, 12, 2734–2743 (2019)

Author affiliation

Department of Genetics and Genome Biology

Version

  • VoR (Version of Record)

Published in

Genetics in Medicine

Volume

21

Issue

12

Pagination

2734 - 2743

Publisher

Springer Nature for American College of Medical Genetics

issn

1098-3600

eissn

1530-0366

Acceptance date

2019-06-17

Copyright date

2019

Publisher version

https://www.nature.com/articles/s41436-019-0595-x#Abs1

Language

English